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Wednesday, August 3, 2011

Plant biologists dissect genetic mechanism enabling plants to overcome environmental challenge



Grassy tillers1 suppresses branching, enabling maize to grow taller when shade encroaches — a key to teosinte’s ancient domestication.
When an animal gets too hot or too cold, or feels pangs of hunger or thirst, it tends to relocate – to where it’s cooler or hotter, or to the nearest place where food or water can be found.  But what about vegetative life?  What can a plant do under similar circumstances?
Plants can’t change the climate and they can’t uproot themselves to move to a more favorable spot.  Yet they do respond successfully to changes in environmental conditions in diverse ways, many of which involve modifications of the way they grow and develop.
Compare wild-type maize plant (right) with one (left) in which the gene called grassy tillers1 is mutated. Arrows point to lateral branches called tillers, which are suppressed in the wild type.
Plant biologists at Cold Spring Harbor Laboratory (CSHL) have now discovered at the genetic level how one species of grass plant responds to the challenge to growth posed by shade.  Central to this work is the team’s identification of the role played by a gene called grassy tillers1, or gt1, whose expression, they confirmed, is controlled by light signaling.
The discovery of gt1’s role is full of implication, for it occurs in maize, one of the world’s most important food crops, and the genetic trick it performs, which results in changing the plant’s shape, suggests how maize’s ancestor in the grass family was domesticated by people in Mexico and Central America thousands of years ago.  The discovery also suggests a present-day strategy for improving yield in switchgrass, a biofuel source.
In maize – or corn, as it is commonly referred to in North America – it has long been known at the level of effects, but not causes, how an unimpressive grass plant called teosinte was improved upon genetically through trial and error to become a prime source of food for the human race.  As anyone who has seen a corn field knows, modern maize plants grow in close proximity, in long rows, and tend to produce robust, branchless stalks which yield one or two large ears apiece.
“The domestication of maize from its wild ancestor teosinte resulted in a striking modification of the plant’s architecture, and this fact provided a starting point for our work,” says CSHL Professor David Jackson, who led the research team which also included scientists from Cornell University; the University of Wisconsin, Madison; North Carolina State University; the University of California, San Diego and Pioneer Hi-Bred.  The team’s findings appear today online ahead of print in Proceedings of the National Academy of Sciences.
One can plainly see that maize plants produce very few lateral branches at their base.  The sparseness of tillers, as these branches are called by plant biologists, is the first clue: plants with many lateral branches don’t tend to grow well in close proximity, for their branches and leaves tend to throw any close neighbors into shade, thus limiting access to sunlight, their common prime energy source.  By severely limiting its lateral branching, maize is able to redirect its energy to the primary shoot, which grows taller and escapes the shade.
“It is actually human selection that has done this,” explains Jackson. “Although maize plants produce tiller buds, the nascent branches fail to grow out, which results in the plant’s familiar dominant central stalk.”   The team knew that maize plants in whichgt1 is mutated generate several tillers and additional ear branches; this suggested that gt1 expression is normally associated with the suppression of tiller growth.  This was confirmed in tests in which gt1 expression was measured in plants grown in the laboratory equivalent of shade.
Another maize gene called teosinte branched1, or tb1, is also known to regulate tiller bud growth and lateral branching in maize, and to be active in response to internal signals indicating the presence of shade.  The next question was whether the two genes act in a common pathway, or separately.  The expression of each was measured when the other was experimentally inactivated.  “We found that gt1 doesn’t get activated unless tb1 is active; but that tb1 can act without gt1,” says Jackson. “Taken together, our experiments indicated that the two genes are indeed part of a common pathway, in which gt1 is downstream of tb1 – it is not expressed until after tb1 is expressed.”
Knowing that ancestral teosinte is a highly branched and tillered plant, the team tested the hypothesis that it was the gt1 gene that was specifically (if unwittingly) selected by ancient agriculturalists in their trial-and-error attempts to domesticate a wild grass to produce a new source of food.  By sequencing gt1 from diverse lines of modern maize and wild teosinte, “we obtained significant evidence that gt1 was selected during domestication,” according to Jackson.
“Tillering is an important trait in the grass family, and by modifying tiller production agriculturalists have increased yield in grasses such as maize and rice.  Understanding the molecular mechanisms behind that modification may now provide us with a means to increase biomass production in switchgrass or other potential biofuel crops,” Jackson adds.
grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses” appears online ahead of print in Proceedings of the National Academy of Sciences August 1, 2011.  The authors are: Clinton J. Whipple, Tesfamichael H. Kebrom, Allison L. Weber, Fang Yang, Darren Hall, Robert Meeley, Robert Schmidt, John Doebley, Thomas P. Brutnell and David P. Jackson.
This research was supported by generous grants provided by the National Science Foundation and the US Department of Agriculture.

Breeding Crops With Deeper Roots Could 'Slash CO2 Levels'


New research suggests that breeding crops with roots a meter deeper in the ground could lower atmospheric carbon dioxide levels dramatically, with significant environmental benefits. (Credit: iStockphoto/Orlando Rosu)

Science Daily — Breeding crops with roots a metre deeper in the ground could lower atmospheric CO2 levels dramatically, with significant environmental benefits, according to research by a leading University of Manchester scientist.













In principle, any crops could be treated in this way, giving more productive yields while also being better for the environment.Writing in the Annals of Botany, Professor Douglas Kell argues that developing crops that produce roots more deeply in the ground could harvest more carbon from the air, and make crops more drought resistant, while dramatically reducing carbon levels.Although the amount of carbon presently sequestered in the soil in the natural environment and using existing crops and grasses has been known for some time, Professor Kell's new analysis is the first to reveal the benefits to the environment that might come from breeding novel crops with root traits designed to enhance carbon sequestration.Professor Kell, Professor of Bioanalytical Science at the University as well as Chief Executive of the Biotechnology and Biological Sciences Research Council (BBSRC), has also devised a carbon calculator that can show the potential benefits of crops that burrow more deeply in the ground.With this, he has calculated that -- depending on the time it takes them to break down -breeding crops that could cover present cropland areas but that had roots a metre deeper in the soil could double the amount of carbon captured from the environment. This could be a significant weapon in the fight against climate change.
The soil represents a reservoir that contains at least twice as much carbon as does the atmosphere, yet mainly just the above-ground plant biomass is harvested in agriculture, and plant photosynthesis represents the effective origin of the overwhelming bulk of soil carbon.
Breeding crop plants with deeper and bushy root ecosystems could simultaneously improve both the soil structure and its steady-state carbon, water and nutrient retention, as well as sustainable plant yields.
Professor Kell argues that widespread changes in agricultural practice are needed, in an environment in which edible crop yields also need to increase substantially and sustainably, and where transport fuels and organic chemicals will need to come from modern (rather than fossil) photosynthesis.
It is known that massive CO2 reductions in the atmosphere over geological time have happened because of the rise of deep-rooted trees and flowering plants.
Most cultivated agricultural crops have root depths that do not extend much beyond one metre. Doubling this, Professor Kell argues, would dramatically reduce CO2 levels.
Existing studies, which have doubted the benefits of deep roots in carbon sequestration, do not make soil measurements much below a metre, and the kinds of root depths proposed by Professor Kell would more than double that.
He said: "This doubling of root biomass from a nominal 1m to a nominal 2m is really the key issue, together with the longevity of the roots and carbon they secrete and sequester below-ground.
"What matters is not so much what is happening now as what might be achieved with suitable breeding of plants with deep and reasonably long-lived roots. Many such plants exist, but have not been bred for agriculture.
"In addition to the simple carbon sequestration that this breeding could imply -- possibly double that of common annual grain crops -- such plants seem to mobilise and retain nutrients and water very effectively over extended periods, thus providing resistance to drought, flooding and other challenges we shall face from climate change.
"While there is a way to go before such crops might have, for example, the grain yields of present day cereals, their breeding and deployment seems a very promising avenue for sustainable agriculture."
The carbon sequestration calculator is athttp://dbkgroup.org/carbonsequestration/rootsystem.html

Engineers Fly World's First 'Printed' Aircraft



SULSA is the world's first 'printed' aircraft. (Credit: Project SULSA UAV)

Science Daily — Engineers at the University of Southampton have designed and flown the world's first 'printed' aircraft, which could revolutionise the economics of aircraft design.








No fasteners were used and all equipment was attached using 'snap fit' techniques so that the entire aircraft can be put together without tools in minutes.The SULSA (Southampton University Laser Sintered Aircraft) plane is an unmanned air vehicle (UAV) whose entire structure has been printed, including wings, integral control surfaces and access hatches. It was printed on an EOS EOSINT P730 nylon laser sintering machine, which fabricates plastic or metal objects, building up the item layer by layer.
The electric powered vehicle aircraft, with a 2-metres wingspan, has a top speed of nearly 100 miles per hour, but when in cruise mode is almost silent. The aircraft is also equipped with a miniature autopilot developed by Dr Matt Bennett, one of the members of the team.
Laser sintering allows the designer to create shapes and structures that would normally involve costly traditional manufacturing techniques. This technology allows a highly-tailored aircraft to be developed from concept to first flight in days. Using conventional materials and manufacturing techniques, such as composites, this would normally take months. Furthermore, because no tooling is required for manufacture, radical changes to the shape and scale of the aircraft can be made with no extra cost.
This project has been led by Professors Andy Keane and Jim Scanlan from the University's Computational Engineering and Design Research group.
Professor Scanlon says: "The flexibility of the laser sintering process allows the design team to re-visit historical techniques and ideas that would have been prohibitively expensive using conventional manufacturing. One of these ideas involves the use of a Geodetic structure. This type of structure was initially developed by Barnes Wallis and famously used on the Vickers Wellington bomber which first flew in 1936. This form of structure is very stiff and lightweight, but very complex. If it was manufactured conventionally it would require a large number of individually tailored parts that would have to be bonded or fastened at great expense."
Professor Keane adds: "Another design benefit that laser sintering provides is the use of an elliptical wing planform. Aerodynamicists have, for decades, known that elliptical wings offer drag benefits. The Spitfire wing was recognised as an extremely efficient design but it was notoriously difficult and expensive to manufacture. Again laser sintering removes the manufacturing constraint associated with shape complexity and in the SULSA aircraft there is no cost penalty in using an elliptical shape."
SULSA is part of the EPSRC-funded DECODE project, which is employing the use of leading edge manufacturing techniques, such as laser sintering, to demonstrate their use in the design of UAVs.
The University of Southampton has been at the forefront of UAV development since the early 1990s, when work began on the Autosub programme at its waterfront campus at the National Oceanography Centre, Southampton. A battery powered submarine travelled under sea ice in more than 300 voyages to map the North Sea, and assess herring stocks.
Now, the University is launching a ground-breaking course which enables students to take a Master's Degree in unmanned autonomous vehicle (UAV) design.

Dream Screens from Graphene: Indium-Free Transparent, Flexible Electrodes Developed


A hybrid material that combines a fine aluminum mesh with a single-atom-thick layer of graphene outperforms materials common to current touch screens and solar cells. The transparent, flexible electrodes were developed in the lab of Rice University chemist James Tour. (Credit: Yu Zhu/Rice University)
Science Daily  — Flexible, transparent electronics are closer to reality with the creation of graphene-based electrodes at Rice University. The lab of Rice chemist James Tour lab has created thin films that could revolutionize touch-screen displays, solar panels and LED lighting. The research was reported in the online edition of ACS Nano.















The lab's hybrid graphene film is a strong candidate to replace indium tin oxide (ITO), a commercial product widely used as a transparent, conductive coating. It's the essential element in virtually all flat-panel displays, including touch screens on smart phones and iPads, and is part of organic light-emitting diodes (OLEDs) and solar cells.
Flexible, see-through video screens may be the "killer app" that finally puts graphene -- the highly touted single-atom-thick form of carbon -- into the commercial spotlight once and for all, Tour said. Combined with other flexible, transparent electronic components being developed at Rice and elsewhere, the breakthrough could lead to computers that wrap around the wrist and solar cells that wrap around just about anything.
ITO works well in all of these applications, but has several disadvantages. The element indium is increasingly rare and expensive. It's also brittle, which heightens the risk of a screen cracking when a smart phone is dropped and further rules ITO out as the basis for flexible displays.
The Tour Lab's thin film combines a single-layer sheet of highly conductive graphene with a fine grid of metal nanowire. The researchers claim the material easily outperforms ITO and other competing materials, with better transparency and lower resistance to electric current.
"Many people are working on ITO replacements, especially as it relates to flexible substrates," said Tour, Rice's T.T. and W.F. Chao Chair in Chemistry as well as a professor of mechanical engineering and materials science and of computer science. "Other labs have looked at using pure graphene. It might work theoretically, but when you put it on a substrate, it doesn't have high enough conductivity at a high enough transparency. It has to be assisted in some way."
Conversely, said postdoctoral researcher Yu Zhu, lead author of the new paper, fine metal meshes show good conductivity, but gaps in the nanowires to keep them transparent make them unsuitable as stand-alone components in conductive electrodes.
But combining the materials works superbly, Zhu said. The metal grid strengthens the graphene, and the graphene fills all the empty spaces between the grid. The researchers found a grid of five-micron nanowires made of inexpensive, lightweight aluminum did not detract from the material's transparency.
"Five-micron grid lines are about a 10th the size of a human hair, and a human hair is hard to see," Tour said.
Tour said metal grids could be easily produced on a flexible substrate via standard techniques, including roll-to-roll and ink-jet printing. Techniques for making large sheets of graphene are also improving rapidly, he said; commercial labs have already developed a roll-to-roll graphene production technique.
"This material is ready to scale right now," he said.
The flexibility is almost a bonus, Zhu said, due to the potential savings of using carbon and aluminum instead of expensive ITO. "Right now, ITO is the only commercial electrode we have, but it's brittle," he said. "Our transparent electrode has better conductivity than ITO and it's flexible. I think flexible electronics will benefit a lot."
In tests, he found the hybrid film's conductivity decreases by 20 to 30 percent with the initial 50 bends, but after that, the material stabilizes. "There were no significant variations up to 500 bending cycles," Zhu said. More rigorous bending test will be left to commercial users, he said.
"I don't know how many times a person would roll up a computer," Tour added. "Maybe 1,000 times? Ten thousand times? It's hard to see how it would wear out in the lifetime you would normally keep a device."
The film also proved environmentally stable. When the research paper was submitted in late 2010, test films had been exposed to the environment in the lab for six months without deterioration. After a year, they remain so.
"Now that we know it works fine on flexible substrates, this brings the efficacy of graphene a step up to its potential utility," Tour said.
Rice graduate students Zhengzong Sun and Zheng Yan and former postdoctoral researcher Zhong Jin are co-authors of the paper.
The Office of Naval Research Graphene MURI program, the Air Force Research Laboratory through the University Technology Corporation, the Air Force Office of Scientific Research and the Lockheed Martin Corp./LANCER IV program supported the research.

Nanoscale Pillars Could Have a Big Role in Future Batteries


Power pillars: This battery electrode, shown in cross section under an electron microscope, consists of nanoscale tin pillars sandwiched between sheets of graphene.
Credit: Lawrence Berkeley

ENERGY


A new fabrication technique lets batteries use tin electrodes, and store more energy.
  • BY KATHERINE BOURZAC
Tin, silicon, and a few other elements have long been languishing on chemists' list of electrode materials that could, in theory, help lithium-ion batteries hold more energy. A new way of structuring these materials could at last allow them to be used in this way.
Researchers at the Lawrence Berkeley National Laboratory made tin electrodes by using layers of graphene to protect the normally fragile tin. These first tin electrodes are a sign that materials scientists have made a great deal of progress in using nanoscale structures to improve batteries.
Making battery electrodes from tin or silicon can boost the battery's overall energy storage. That's because such materials can take in more lithium during charging and recharging than carbon, which is normally used. But silicon and tin tend to be unstable as electrodes. Tin takes up so much lithium that it expands in volume by a factor of two to three during charging. "This forms cracks, and the tin leaks into the electrolyte and is lost," says Yuegang Zhang, a scientist at Lawrence Berkeley.
Zhang's clever solution is to layer the tin between sheets of graphene, single-atom-thick sheets of carbon mesh. Graphene is highly conductive, and while it's flexible, it's also the strongest material ever tested.
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The tin-graphene electrode consists of two layers of tin nanopillars sandwiched between three sheets of graphene. The pillars help the electrode remain stable: instead of fracturing, the tin expands and contracts during charging without breaking. The space between the pillars means there's plenty of room for the battery's electrolyte to move around, which ensures fast charging speeds.
Zhang's group has made prototype batteries featuring these electrodes. The prototype tin-graphene batteries can charge up in about 10 minutes and store about 700 milliamp-hours per gram of charge. This storage capacity is maintained over 30 charge cycles. The batteries will ultimately need to hold their performance for hundreds of charge cycles. "The performance they have is quite reasonable, and this has a pretty clear application in existing batteries," saysYi Cui, associate professor of materials science at Stanford University. Cui was not involved with the work.
Several other research groups are working on promising battery materials that include nanoscale structures. Cui has founded a company called Amprius to commercialize another kind of battery anode that features silicon nanowires. The nanostructure of these wires also helps the fragile material remain stable as it takes up and releases lithium. Another group, led by Pulickel Ajayan at Rice, recently built a nanostructured battery that incorporates a tin electrode, in this case integrating the electrodes and the electrolyte on individual nanowires. Arrayed together, these nanowires could make long-lasting microbatteries for small devices such as sensors.
Zhang is working to demonstrate the use of the nanopillar structure with other fragile electrode materials, including silicon. The process may add to the cost of battery production, but the performance gains could offset the potential additional cost. "People typically assume that a fancy nanoscale structure will cost more, but it may not," says Zhang.

New Process Could Make Canadian Oil Cheaper, Cleaner


A method for getting oil out of tarry sands could reduce the costs and lower the greenhouse-gas emissions associated with its extraction.
  • BY KEVIN BULLIS
New technology for extracting oil from oil sands could more than double the amount of oil that can be extracted from these abundant deposits. It could also reduce greenhouse-gas emissions from the process by up to 85 percent. The technology was developed by N-Solv, an Alberta-based consortium that recently received $10 million from the Canadian government to develop the technology.
Canada's oil sands are a huge resource. They contain enough oil to supply the U.S. for decades. But they are made up of a tarry substance called bitumen, which requires large amounts of energy to extract from the ground and prepare for transport to a refinery. This fact has raised concerns about the impact of oil sands on climate change. The concerns have been heightened by plans to build a new pipeline for transporting crude oil from the sands to refineries in the United States.
Most oil sands production currently involves digging up oily sand deposits near the surface and processing the sludgy material with heat and chemicals to free the oil and reduce its viscosity so it can flow through a pipeline. But 80 percent of oil sands are too deep for this approach. Getting at the deeper oil requires treating the bitumen underground so it can be pumped out through an oil well. The most common technique in new projects involves injecting the bitumen with steam underground. But producing the steam means burning natural gas, which emits carbon dioxide. And the oil that's pumped out is still too thick to flow through a pipeline, so it has to be partially refined, which emits still more greenhouse gases.
N-Solv's process requires less energy because it uses a solvent rather than steam to free the oil, says Murray Smith, a member of N-Solv's board of directors. The solvent, such as propane, is heated to a relatively low temperature (about 50 °C) and injected into a bitumen deposit. The solvent breaks down the bitumen, allowing it to be pumped out along with the propane, which can be reused. The solvent approach requires less energy than heating, pumping, and recycling water for steam. And because the heaviest components of the bitumen remain underground, the oil that results from the solvent process needs to be refined less before it can be transported in a pipeline.
Because the new process requires less energy, it should also be cheaper. Smith adds that the equipment needed for heating and reusing the propane is less expensive than technology for managing the large volumes of water used in the steam process. With conventional techniques, oil prices have to be above $50 to $60 per barrel—as they have been for several years—for oil sands to be economical. Smith says that with the solvent process, oil sands are still economical even if oil is $30 to $40 per barrel, close to what it was in the 1990s and early 2000s (in inflation-adjusted dollars). N-Solv says the lower costs will make it possible to economically extract more than twice as much oil from the oil sands compared to conventional technologies.
The idea of using solvents to get at oil sands was proposed in the 1970s, but early experiments showed that the process couldn't produce oil quickly enough. Two things changed that, according to N-Solv. First, horizontal drilling technologies now make it possible to run a solvent injection well along the length of an oil sands deposit, increasing the area in contact with the solvent, thus increasing production. Second, N-Solv determined that even small amounts of methane—a by-product of using a solvent—could contaminate the propane and degrade its performance. So N-Solv introduced purification equipment to separate methane from the propane before it is reused. The separated methane can also be used to heat the propane, further reducing energy costs.
Although N-Solv's technology could reduce carbon-dioxide emissions from production, most of the emissions associated with oil sands—as with any source of oil—come not from producing the oil, but from burning it in vehicles and furnaces. The technology's impact on climate change will depend on whether the process leads to increased oil production—if it does, it may actually result in increased net greenhouse-gas emissions, says David Keith, a chemical and petroleum engineering professor at the University of Calgary.
So far, the process has been tested only in a lab. Now N-Solv will begin a pilot project that could produce 500 barrels of oil a day. The $60 million project, which is mostly funded by private sources, will determine whether the process can work on a larger scale.

Nissan Rolls Out a System that Lets Your Electric Car Serve as a Backup Battery for Your House




The Nissan Leaf Zero emission vehicle. Backup power storage. Tom Raftery via Wikimedia
The Nissan Leaf can run 70-plus miles on a single charge. Now, it can also power a family home for two days if it needs to. The “Leaf to Home” project Nissan is rolling out in Japan allows the electricity stored in the Leaf’s lithium-ion battery to be fed back into a home, running major appliances for up to two days.
The “Leaf to Home” system simply allows for a quick charging port to be mounted on the home’s electricity distribution panel to receive energy from the car. Those 24 kilowatt hours stored in a fully energized Leaf can run the average Japanese household for two days, even when the refrigerator, climate control, and other large appliances are running at the same time.
Given that Japanese communities are still dealing with the effects of the disastrous March earthquake and associated tsunami, its not hard to imagine how households might need a source of backup power, or how valuable that backup power might be during a bad situation. Some areas in Japan were left without electricity for days and days in the aftermath--a problem “Leaf to Home” could remedy, at least for a time. Not to mention, in addition to serving as a backup power source the system allows the car to store up power during off-peak electricity generation hours and feed it back into the house during periods of high demand.